Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14350719_14354474_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14350719 - 14354474

Intron Length:

3756

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTGACATATGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTGACA

Flanking Amino Acid:

DICVNEGEQNCFYDIHDVVV

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

89.1

24.2

Major BPS

100

1.24

0.5

100

Major PPT

69.5

0.44

63.1

42.2

Minor 5ss

39.8

-1.1

2.9

41.5

Minor BPS

77.6

0.86

1.5

88.13

28.3

Associated Gene:

Gene:

SHQ1

Ensembl Gene ID:

ENSAPLG00000013926

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040120

14337637 - 14383206

45570