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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14354599_14361516_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14354599 - 14361516
Intron Length:
6918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
AATCTATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTCTAGTGAATT
Flanking Amino Acid:
LNDTVMILQLGRAAVLKCLL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
76.6
0.6
0.9
66.8
43.3
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
48.4
-0
2.3
73.59
43.5

Associated Gene:

Gene:
SHQ1
Ensembl Gene ID:
ENSAPLG00000013926
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040120
14337637 - 14383206
45570
ENSAPLT00000029609
14339034 - 14383206
44173
ENSAPLT00000021856
14337637 - 14383206
45570
ENSAPLT00000014512
14337637 - 14383206
45570