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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14361638_14382655_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14361638 - 14382655
Intron Length:
21018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
GTAACATTAAAT
Flanking Amino Acid:
TDYCVWIQKTKSKKLAALSE
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
76.9
0.6
1
77.8
34.4
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
56.9
0.29
1.8
73.86
41.6

Associated Gene:

Gene:
SHQ1
Ensembl Gene ID:
ENSAPLG00000013926
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040120
14337637 - 14383206
45570
ENSAPLT00000029609
14339034 - 14383206
44173
ENSAPLT00000021856
14337637 - 14383206
45570
ENSAPLT00000014512
14337637 - 14383206
45570