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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14383023_14383117_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14383023 - 14383117
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ACACTGCAATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CACACTGCAATT
Flanking Amino Acid:
RQVANTSMVESFRTA*
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
29.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
51.2
0.03
1
49
38.8
Minor 5ss
30.7
-2.2
3.1
40.9
45.4
Minor BPS
41.6
-0.5
2.1
53.32
42.6

Associated Gene:

Gene:
SHQ1
Ensembl Gene ID:
ENSAPLG00000013926
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021856
14337637 - 14383206
45570