About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14424876_14427660_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14424876 - 14427660
Intron Length:
2785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
TCCCTCCTCAAG
Flanking Amino Acid:
SLCLHKPRFKKPKRQAKPAA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
66.5
0.37
1
63.7
31.7
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
39.5
-0.9
2
41.91
42.8

Associated Gene:

Gene:
RYBP
Ensembl Gene ID:
ENSAPLG00000013882
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014457
14424733 - 14465603
40871