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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14426635_14427660_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14426635 - 14427660
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
TCCCTCCTCAAG
Flanking Amino Acid:
MVMGDKKSPTRPKRQAKPAA
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
66.5
0.37
1
63.7
31.7
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
39.5
-0.9
2
41.91
42.8

Associated Gene:

Gene:
RYBP
Ensembl Gene ID:
ENSAPLG00000013882
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021176
14425771 - 14466129
40359