Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14461625_14465350_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14461625 - 14465350

Intron Length:

3726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTATTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTCCTTTATT

Flanking Amino Acid:

TKTSDSNHTSRPRLKNVDRS

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

1.1

84.1

30.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.2

0.72

0.7

81.3

29.1

Minor 5ss

49.3

-0

2.5

67.2

43.9

Minor BPS

74.6

0.86

1.6

87.9

37.7

Associated Gene:

Gene:

RYBP

Ensembl Gene ID:

ENSAPLG00000013882

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021176

14425771 - 14466129

40359

ENSAPLT00000014457

14424733 - 14465603

40871