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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14482227_14483576_F

Intron Information:

Intron Rank:
134291
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
14482227 - 14483576
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
GAATCTGTTCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
CATTGTTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
57
0.16
1.2
52.8
45.7
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
59.9
0.17
1.9
63.93
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022177
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020608
14481741 - 14484711
2971