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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14512567_14513187_R

Intron Information:

Intron Rank:
154019
Intron Class:
major
Intron Phase:
Intron Coordinates:
14512567 - 14513187
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
ACTAGCCAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
75.5
0.57
0.8
72.2
32.4
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
42
-0.6
2.3
53.94
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030346
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041834
14511137 - 14513913
2777