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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14561397_14562162_F

Intron Information:

Intron Rank:
139819
Intron Class:
major
Intron Phase:
Intron Coordinates:
14561397 - 14562162
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TACTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.3
33.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
49.3
-0
2.3
62.4
36
Minor BPS
57.7
0.32
1.8
74.03
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025174
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018136
14561299 - 14571122
9824