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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14562442_14563292_F

Intron Information:

Intron Rank:
139823
Intron Class:
major
Intron Phase:
Intron Coordinates:
14562442 - 14563292
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
ATTTATATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTAGTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
34.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81
0.7
0.9
74.1
39.5
Minor 5ss
41.8
-0.9
3
53.3
38
Minor BPS
49.1
0.01
1.6
65.65
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025174
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043246
14562163 - 14571012
8850