About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14562640_14568527_F

Intron Information:

Intron Rank:
139820
Intron Class:
major
Intron Phase:
Intron Coordinates:
14562640 - 14568527
Intron Length:
5888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CTAATGTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
68.8
38.6
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
41.5
-0.9
3
57.8
46.4
Minor BPS
43.7
-0.4
2.2
60.3
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025174
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018136
14561299 - 14571122
9824