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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14563738_14568527_F

Intron Information:

Intron Rank:
139825
Intron Class:
major
Intron Phase:
Intron Coordinates:
14563738 - 14568527
Intron Length:
4790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CTAATGTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
43.7
-0.4
2.2
60.3
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025174
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043246
14562163 - 14571012
8850