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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14623738_14625729_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14623738 - 14625729
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTCCCATAACC
Flanking Amino Acid:
HLMRGERRPLWEEESNAKGG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
66.4
0.37
1
59.7
39.8
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
74.5
0.75
1.6
85.67
31.7

Associated Gene:

Gene:
EIF4E3
Ensembl Gene ID:
ENSAPLG00000023114
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042312
14613594 - 14632386
18793