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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14625791_14628865_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14625791 - 14628865
Intron Length:
3075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
GCAAAAGTAACT
Flanking Amino Acid:
WKMKVPKESTAAVWKELLLA
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.4
35.9
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
84.5
0.78
0.6
84.6
23.2
Minor 5ss
42.6
-0.8
2.6
54.6
42.8
Minor BPS
41
-0.6
2.3
56.89
44.6

Associated Gene:

Gene:
EIF4E3
Ensembl Gene ID:
ENSAPLG00000023114
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042312
14613594 - 14632386
18793