About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14630479_14631012_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14630479 - 14631012
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
HTSFKAVFYKPHREHHAFEG
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.7
0.56
0.7
73.4
24.9
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
EIF4E3
Ensembl Gene ID:
ENSAPLG00000023114
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042312
14613594 - 14632386
18793