About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14704_15901_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14704 - 15901
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTAAGT
5'SS Class:
major
3'SS Sequence:
CCTCCCTTATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACCC
Flanking Amino Acid:
LSWIQENMSADLKMKSSTPF
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.1
62.7
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
52.6
0.06
1.7
65.7
34.6
Minor 5ss
41.5
-0.9
2.9
55.4
43.6
Minor BPS
57.6
0.22
1.8
73.67
37.7

Associated Gene:

Gene:
OVCH2
Ensembl Gene ID:
ENSAPLG00000004207
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004323
10484 - 20591
10108