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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14814602_14869618_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14814602 - 14869618
Intron Length:
55017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TAAATTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCCCCTAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.6
0.55
1
70.9
43.6
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
59.2
0.37
1.7
72.74
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045128
14707090 - 15025515
318426
ENSAPLT00000030609
14707090 - 15025515
318426