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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14952992_14958409_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14952992 - 14958409
Intron Length:
5418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGACA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTGTATTGACA
Flanking Amino Acid:
QQHAGKQPKEPQQQQVATQQ
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
39.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
30.8
-2.2
3.3
40.8
45.2
Minor BPS
54.1
0.12
1.7
66.63
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012301
14918567 - 15022661
104095
ENSAPLT00000045128
14707090 - 15025515
318426
ENSAPLT00000030609
14707090 - 15025515
318426