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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14964910_14980651_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14964910 - 14980651
Intron Length:
15742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAA
U12 Branch Point Sequence:
GTTACAACACTT
Flanking Amino Acid:
QLSVHTPKRESLSHEEHSHS
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
55.8
0.14
1.2
67
39.8
Major PPT
85.3
0.79
0.7
77.4
31.4
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
39.7
-0.7
2.1
60.38
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030609
14707090 - 15025515
318426
ENSAPLT00000012301
14918567 - 15022661
104095