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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14964910_14990366_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14964910 - 14990366
Intron Length:
25457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCACTTAATG
Flanking Amino Acid:
QLSVHTPKRERHLNSEHALD
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.9
0.65
1
72.3
42.5
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
69.6
0.48
1.6
74.17
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045128
14707090 - 15025515
318426