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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15005279_15005387_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15005279 - 15005387
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TGCTCTTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CTGCTCTTATTC
Flanking Amino Acid:
SDKYNVPISSADIAQNQEFY
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78.9
0.65
0.9
77.2
36.1
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
51.3
0.02
1.6
58.7
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012301
14918567 - 15022661
104095
ENSAPLT00000045128
14707090 - 15025515
318426
ENSAPLT00000030609
14707090 - 15025515
318426