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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15005468_15006105_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15005468 - 15006105
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGTTCATAACT
Flanking Amino Acid:
PFTYASLIRQAILESPEKQL
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
65.8
0.36
1.1
65.6
40.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
72.7
0.79
1.6
88.54
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045128
14707090 - 15025515
318426
ENSAPLT00000030609
14707090 - 15025515
318426
ENSAPLT00000012301
14918567 - 15022661
104095