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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15006208_15010842_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15006208 - 15010842
Intron Length:
4635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATACTTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTCTTTTATA
Flanking Amino Acid:
YFRRNAATWKNAVRHNLSLH
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.7
0.51
1
66.2
39.9
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
65.9
0.5
1.6
74.52
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030609
14707090 - 15025515
318426
ENSAPLT00000012301
14918567 - 15022661
104095
ENSAPLT00000045128
14707090 - 15025515
318426