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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15012948_15016491_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15012948 - 15016491
Intron Length:
3544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGGCTCTTCATA
Flanking Amino Acid:
YCTPLNAALQASMAENSIPL
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
69.8
0.45
1.1
65.5
41
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
50
-0
1.7
60.78
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011828
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012301
14918567 - 15022661
104095
ENSAPLT00000045128
14707090 - 15025515
318426
ENSAPLT00000030609
14707090 - 15025515
318426