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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15114399_15115312_F

Intron Information:

Intron Rank:
144186
Intron Class:
major
Intron Phase:
Intron Coordinates:
15114399 - 15115312
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
72.1
39.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72
0.5
0.9
67.2
34
Minor 5ss
27.1
-2.6
2.9
31.3
42.6
Minor BPS
66.3
0.59
1.6
82.83
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027726
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035770
15113462 - 15115833
2372