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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15251521_15277664_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15251521 - 15277664
Intron Length:
26144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
CCTTTCCTACTC
Flanking Amino Acid:
DKQNISWLKKELDKPILQPL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
47.2
-0.2
1.9
57.62
42.1

Associated Gene:

Gene:
MDFIC2
Ensembl Gene ID:
ENSAPLG00000023736
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040621
15250008 - 15293628
43621