Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15251521_15284713_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15251521 - 15284713

Intron Length:

33193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCACCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

TGTTTTTCCACC

Flanking Amino Acid:

DKQNISWLKKDSCTSSLTLP

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

73.2

39.3

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

69.6

0.44

1.1

69.1

36.4

Minor 5ss

44.2

-0.6

2.9

59.3

45.5

Minor BPS

49.6

-0

1.9

66.57

39.4

Associated Gene:

Gene:

MDFIC2

Ensembl Gene ID:

ENSAPLG00000023736

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041251

15250008 - 15293628

43621