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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15295036_15298100_R

Intron Information:

Intron Rank:
147120
Intron Class:
major
Intron Phase:
Intron Coordinates:
15295036 - 15298100
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTGTG
5'SS Class:
major
3'SS Sequence:
TTTGTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TAAGCACTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
68.8
42.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
87.8
0.85
0.7
85.6
29.1
Minor 5ss
42
-0.9
3.2
54.6
45
Minor BPS
45.3
-0.4
2
51.63
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026462
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025285
15295032 - 15315296
20265