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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15298194_15302838_R

Intron Information:

Intron Rank:
147121
Intron Class:
major
Intron Phase:
Intron Coordinates:
15298194 - 15302838
Intron Length:
4645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TTATTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
65.7
40.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.9
0.81
0.8
85.5
33.8
Minor 5ss
37.5
-1.4
3.1
54.6
42.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026462
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025285
15295032 - 15315296
20265