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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15307051_15314448_R

Intron Information:

Intron Rank:
147123
Intron Class:
major
Intron Phase:
Intron Coordinates:
15307051 - 15314448
Intron Length:
7398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATTATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85
0.79
0.7
80.4
25.1
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
62.6
0.39
1.5
70
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026462
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029246
15306528 - 15315296
8769