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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15340456_15345958_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15340456 - 15345958
Intron Length:
5503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTGCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATAAACC
Flanking Amino Acid:
DRGVKVNCISPGIVDTALIR
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
74.5
37.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
36.9
-1.5
2.7
46.9
41.8
Minor BPS
56.2
0.17
2
68.72
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011893
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012371
15340260 - 15375090
34831