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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15358604_15365224_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15358604 - 15365224
Intron Length:
6621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTCTCCAATA
Flanking Amino Acid:
RVGPIADTLEALHAEDEHFD
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
83.7
0.76
0.8
76.5
37.2
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
58.9
0.28
1.8
76.28
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011893
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012371
15340260 - 15375090
34831