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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15365458_15366457_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15365458 - 15366457
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
QQEHTSSCLNGQIFKMFIHM
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.83
1.1
73.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
80.6
0.69
0.9
76.9
36
Minor 5ss
30.4
-2.2
3.9
40.6
40.8
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011893
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012371
15340260 - 15375090
34831