About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15366550_15368297_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15366550 - 15368297
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGATC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GTTACTCTAATG
Flanking Amino Acid:
AYPDAMAASKRKMAPGHDSG
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.2
37.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
90.5
0.91
0.6
83.8
31.2
Minor 5ss
30.3
-2.3
3.4
42.1
44.9
Minor BPS
53.5
-0
1.8
61.63
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011893
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012371
15340260 - 15375090
34831