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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15368458_15372400_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15368458 - 15372400
Intron Length:
3943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTCC
5'SS Class:
major
3'SS Sequence:
TTTCCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CATTGCTCAATT
Flanking Amino Acid:
GMRGNMRYPAETPAGLIAEN
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
66.7
40.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
84.7
0.78
0.7
82
28.2
Minor 5ss
52.4
0.08
2.4
69.1
41.7
Minor BPS
54.6
0.22
2
73.19
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011893
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012371
15340260 - 15375090
34831