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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15372665_15374984_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15372665 - 15374984
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTTCTCACGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCGTTTTTGATT
Flanking Amino Acid:
EDNRSLQEYPHTVGSHRCPR
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
38.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.1
0.57
1
74.8
34.7
Minor 5ss
43.3
-0.7
2.8
57.5
40.5
Minor BPS
64.2
0.53
1.2
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011893
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012371
15340260 - 15375090
34831