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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15378891_15379510_F

Intron Information:

Intron Rank:
84184
Intron Class:
major
Intron Phase:
Intron Coordinates:
15378891 - 15379510
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
TTTTCCCCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
79.3
0.66
0.9
76.4
37.7
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
56.1
0.27
2.2
85.27
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011962
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012442
15378657 - 15380511
1855