About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15379764_15380410_F

Intron Information:

Intron Rank:
84185
Intron Class:
major
Intron Phase:
Intron Coordinates:
15379764 - 15380410
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCAG
5'SS Class:
major
3'SS Sequence:
TCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTTATTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.7
45.5
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
88.9
0.87
0.7
83.5
31.2
Minor 5ss
29
-2.4
3.4
37.7
47.1
Minor BPS
58.9
0.27
1.8
71.98
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011962
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012442
15378657 - 15380511
1855