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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15389323_15392026_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15389323 - 15392026
Intron Length:
2704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGA
5'SS Class:
major
3'SS Sequence:
TCCTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
ANRHLLLRIQELEMQARAHG
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.2
39.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.5
0.69
0.7
75.1
27
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
MITF
Ensembl Gene ID:
ENSAPLG00000011965
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018929
15388921 - 15464990
76070
ENSAPLT00000012493
15388146 - 15487521
99376
ENSAPLT00000019414
15388146 - 15487521
99376