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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15395012_15397655_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15395012 - 15397655
Intron Length:
2644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATTACCTCATTC
Flanking Amino Acid:
NLPNIKRELTESEARALAKE
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
87.1
0.84
0.7
81.4
30
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
51.7
0.03
1.8
66.08
39.5

Associated Gene:

Gene:
MITF
Ensembl Gene ID:
ENSAPLG00000011965
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018929
15388921 - 15464990
76070
ENSAPLT00000012493
15388146 - 15487521
99376
ENSAPLT00000019414
15388146 - 15487521
99376