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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15404764_15431906_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15404764 - 15431906
Intron Length:
27143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CCTTTCCTAACT
Flanking Amino Acid:
ATQVPMEVLKVQTHLENPTK
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
63.8
47.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.9
0.56
0.9
69.3
35.9
Minor 5ss
32.5
-2
3
41.5
44.9
Minor BPS
65.3
0.56
1.7
79.84
42.4

Associated Gene:

Gene:
MITF
Ensembl Gene ID:
ENSAPLG00000011965
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018929
15388921 - 15464990
76070
ENSAPLT00000012493
15388146 - 15487521
99376
ENSAPLT00000019414
15388146 - 15487521
99376