About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15432154_15464142_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15432154 - 15464142
Intron Length:
31989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GGAAGCTGAGCT
Flanking Amino Acid:
GVLRCGCDQGSNSEHPGASK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
74.9
0.56
0.8
68.4
32
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
42.6
-0.4
2
56.79
44.6

Associated Gene:

Gene:
MITF
Ensembl Gene ID:
ENSAPLG00000011965
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018929
15388921 - 15464990
76070