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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15634931_15635493_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15634931 - 15635493
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATCCCGTTAATA
Flanking Amino Acid:
NTYGNLPLQSRAQPVTPVRL
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
73.2
0.52
1
69.4
36.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
55.2
0.16
2.1
66.94
39.9

Associated Gene:

Gene:
FRMD4B
Ensembl Gene ID:
ENSAPLG00000012468
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043417
15612362 - 15636448
24087