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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15652695_15653026_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15652695 - 15653026
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACCAATTAATA
Flanking Amino Acid:
FMFGITLPLLLMFVHASLRL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.9
0.61
0.9
72.9
36.4
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
47.6
-0.1
1.7
55.06
37

Associated Gene:

Gene:
ARL6IP5
Ensembl Gene ID:
ENSAPLG00000017744
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026877
15652522 - 15661399
8878