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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15653245_15661223_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15653245 - 15661223
Intron Length:
7979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTTCCTTCCCT
Flanking Amino Acid:
MVAAAVVAIVGFLSPLNMLI
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.4
61.7
38.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
100
1.12
0.4
100
0
Minor 5ss
27.5
-2.6
3.1
27.6
36.2
Minor BPS
49.9
0.08
3.7
91.67
38.1

Associated Gene:

Gene:
ARL6IP5
Ensembl Gene ID:
ENSAPLG00000017744
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026877
15652522 - 15661399
8878