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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15662219_15662346_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15662219 - 15662346
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGTGCG
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CCTTCTTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.1
55.7
41.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.2
0.72
0.7
80.7
24.5
Minor 5ss
42
-0.9
3.1
59.6
44.8
Minor BPS
62.7
0.48
1.6
74.98
42.6

Associated Gene:

Gene:
UBA3
Ensembl Gene ID:
ENSAPLG00000013254
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045120
15661862 - 15675201
13340