Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15665244_15666170_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15665244 - 15666170

Intron Length:

927

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGAAAC

5'SS Class:

major

3'SS Sequence:

ATATTTTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AGTCTATTAATT

Flanking Amino Acid:

THPDFEPSTQGLEFLLSTCK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

0.9

29.5

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

78.5

0.64

0.9

73.2

36.5

Minor 5ss

-2.3

2.9

35.1

34.7

Minor BPS

0.36

1.6

73.8

36.6

Associated Gene:

Gene:

UBA3

Ensembl Gene ID:

ENSAPLG00000013254

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045120

15661862 - 15675201

13340

ENSAPLT00000013841

15662347 - 15675910

13564