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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15672911_15673379_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15672911 - 15673379
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
AVASTNAVIAAVCATEVFKI
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.8
0.76
0.8
77.5
35.6
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
UBA3
Ensembl Gene ID:
ENSAPLG00000013254
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045120
15661862 - 15675201
13340
ENSAPLT00000013841
15662347 - 15675910
13564