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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15673417_15673496_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15673417 - 15673496
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTAT
5'SS Class:
major
3'SS Sequence:
TTTGCCATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGCCATTATA
Flanking Amino Acid:
CATEVFKIATSAYIPLNNYL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
75.1
37.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.5
0.6
0.9
70.3
35
Minor 5ss
46.3
-0.4
2.9
67
44.3
Minor BPS
52.8
0.08
2
72.16
39.8

Associated Gene:

Gene:
UBA3
Ensembl Gene ID:
ENSAPLG00000013254
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045120
15661862 - 15675201
13340
ENSAPLT00000013841
15662347 - 15675910
13564